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Immunology · Immunology

The Complement System

A Step 1–focused walkthrough of the complement system: the three activation pathways converging on C3, the roles of C3b, the anaphylatoxins, C5a, and the MAC, and the high-yield regulator/component defects mapped to their signature diseases (Neisseria, hereditary angioedema, PNH, and SLE).

14 min readHigh yield

Overview: What Complement Does

The complement system is ~30 plasma and membrane proteins (made mainly by the liver, circulating as inactive precursors) that "complement" antibodies and phagocytes in destroying microbes. Three activation pathways — classical, lectin, and alternative — converge on cleavage of C3, the central hub of the entire cascade.

Once triggered, complement carries out four board-tested jobs:

  1. OpsonizationC3b coats microbes for phagocytosis
  2. Inflammationanaphylatoxins (C3a, C4a, C5a) and chemotaxis (C5a)
  3. Cytolysis — the membrane attack complex (C5b–C9) punches pores
  4. Immune-complex clearance — C3b tags complexes for removal

Host regulatory proteins keep complement off self-cells. When a specific component or a regulator fails, a characteristic infection or autoimmune pattern appears — exactly the defect-to-disease logic the boards reward.

Schematic of the complement system showing the classical, lectin, and alternative pathways converging on C3, then C5, and forming the membrane attack complex.
Overview scheme: three pathways converge on C3 convertase, then C5 convertase and the MAC. · Wikimedia Commons — English text of 'Image:Complement pathway.png' by DO11.10 German translation of 'Image:Complement pathway.png' by Hduman Galician translation Miguelferig Catalan translation Leptic — Public domain, via Wikimedia Commons
Core Players — Memorize Cold
  • All three pathways converge on C3 convertase → cleaves C3 → C3a + C3b; adding C3b builds C5 convertase → cleaves C5 → C5a + C5b
  • Two primary opsonins = C3b and IgG (C3b binds phagocyte receptor CR1 / CD35)
  • Anaphylatoxins = C3a, C4a, C5a → mast cell/basophil degranulation (histamine); C5a is the most potent
  • C5a = the chemotactic fragment → recruits neutrophils
  • MAC = C5b–C9 → osmotic lysis; the decisive defense against Neisseria (thin gram-negative cell wall)
  • Classical = IgG or IgM immune complexes; Lectin = MBL on mannose; Alternative = microbial surfaces / LPS (spontaneous C3 tickover, stabilized by properdin)
  • Convertase shorthand: classical/lectin C4b2a, alternative C3bBb

The Three Activation Pathways

PathwayTrigger / ActivatorInitiator moleculeBoard pearl
ClassicalIgG or IgM bound to antigen (immune complexes)C1 complex (C1q–C1r–C1s)"GM makes classic cars"
LectinMannose / carbohydrates on microbial surfaceMannose-binding lectin (MBL) + MASPInnate; needs no antibody
AlternativeMicrobial surfaces, LPS/endotoxin; spontaneous C3 "tickover"C3b + Factor B, Factor D, properdinProperdin deficiency → Neisseria

Activation → Amplification → Lysis

The cascade is one enzymatic relay:

  1. Initiation differs by pathway, but all three assemble a C3 convertase (classical/lectin C4b2a; alternative C3bBb, stabilized by properdin).
  2. C3 convertase cleaves C3 → C3a (anaphylatoxin) + C3b (opsonin that also amplifies the loop). Deposition of another C3b converts it into C5 convertase (C4b2a3b or C3bBb3b).
  3. C5 convertase cleaves C5 → C5a (chemotaxis + anaphylatoxin) + C5b. C5b nucleates C6–C7–C8, then polymerized C9 forms the pore = membrane attack complex, causing osmotic lysis.

Regulation is the safety catch. Fluid-phase and GPI-anchored membrane inhibitors keep complement off host cells — DAF (CD55) and CD59 on RBCs, and C1 esterase inhibitor in plasma. Lose the regulator and self-tissue takes the hit (PNH, hereditary angioedema).

Detailed reaction cascade of the complement system: classical, alternative, and lectin pathways, the amplification loop, the terminal pathway, and assembly of the C5b-9 membrane attack complex.
Full cascade with anaphylatoxins (C3a/C5a), opsonin (C3b), and terminal MAC assembly. · Wikimedia Commons — Guido4 — CC BY-SA 4.0, via Wikimedia Commons

Molecule / Regulator → Function → Disease

Molecule / regulatorFunctionDeficiency or defect → disease
C3bOpsonization (binds phagocyte CR1/CD35); immune-complex clearanceC3 deficiency → severe, recurrent pyogenic infections (encapsulated bacteria) + type III hypersensitivity (immune-complex disease)
C3a, C4a, C5aAnaphylatoxins → mast cell/basophil histamine release— (C5a most potent)
C5aNeutrophil chemotaxis (+ anaphylatoxin)
C5b–C9 (MAC)Membrane attack complex → lysisTerminal (C5–C9) deficiency → recurrent Neisseria (meningitidis & gonorrhoeae)
C1 esterase inhibitorInhibits C1 and kallikrein (limits bradykinin)Deficiency → hereditary angioedema (↑bradykinin); ↓C4; avoid ACE inhibitors
DAF (CD55) & CD59GPI-anchored: DAF decays C3 convertase; CD59 blocks MAC (protect self RBCs)PNH (PIGA mutation → no GPI anchor) → intravascular hemolysis + thrombosis
Early classical: C1q, C4, C2Clear immune complexes & apoptotic cellsDeficiency → SLE; C2 = most common complement deficiency
Memory Aids
  • "GM makes classic cars" — IgG and IgM activate the Classical pathway.
  • Anaphylatoxins are the small "a" fragmentsC3a, C4a, C5a trigger histamine; C5a is the most potent and the chemotactic one.
  • "No MAC → Neisseria attack" — terminal complement (C5–C9) or eculizumab-blocked patients get recurrent Neisseria.
  • "C1 INhibitor INhibits" — lose the inhibitor, release the brake on bradykinin → hereditary angioedema.
  • "C3b binds bacteria" — alliteration for C3b = opsonin → phagocytosis.
Defect → Disease Vignettes
  • Recurrent Neisseria — 19-year-old dorm resident with a second episode of meningococcal meningitis (or recurrent disseminated gonococcal infection); CH50 is low. → Terminal complement (C5–C9) deficiency (consider properdin deficiency if the alternative-pathway screen / AH50 is abnormal but CH50 is normal).
  • Hereditary angioedema — recurrent non-pitting, non-pruritic, urticaria-free swelling of lips/face/larynx and colicky bowel edema; family history; an attack follows starting an ACE inhibitor; C4 is low. Antihistamines and epinephrine don't work (it's bradykinin-mediated). → C1 esterase inhibitor deficiency.
  • PNH — young adult with episodic dark (cola-colored) morning urine, fatigue, and an unexplained venous thrombosis (e.g., Budd–Chiari); flow cytometry shows loss of CD55/CD59. → Paroxysmal nocturnal hemoglobinuria; treat with eculizumab (anti-C5) and vaccinate against meningococcus first.
  • SLE + infections — young woman with malar rash and arthritis plus recurrent sinopulmonary infections; homozygous early-classical (C1q/C4/C2) deficiency. C1q deficiency carries the highest single-gene risk for lupus (rare but highly penetrant).
Labs & Treatment Pearls
  • CH50 tests the classical pathway (needs C1–C9); a low CH50 points to a classical or terminal component deficiency.
  • Low C3 AND low C4 → active SLE, serum sickness. Low C3, normal C4post-streptococcal GN and membranoproliferative GN (C3 nephritic factor stabilizes C3 convertase, consuming C3).
  • Eculizumab = anti-C5 monoclonal antibody (blocks C5a + MAC); used in PNH and atypical HUS → creates functional terminal deficiency → ↑ Neisseria risk → give meningococcal vaccine first.
  • Hereditary angioedema management: C1-INH concentrate, icatibant (bradykinin B2 antagonist), or ecallantide (kallikrein inhibitor).
  • Quick recall: opsonins = C3b + IgG; chemotaxis = C5a; anaphylatoxins = C3a/C4a/C5a; MAC = C5b–C9.

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