Skip to content
All lessons
Infectious Disease · Infectious Disease

Sepsis & Bloodstream Infections

A Step 2 CK–focused sepsis lesson covering Sepsis-3 definitions, the Hour-1 bundle, and exposure-driven organism/treatment reasoning, anchored by neutropenic-fever and septic-shock next-best-step vignettes. Emphasizes cultures-before-antibiotics, norepinephrine-first pressor management, and classic buzzwords (asplenia/OPSI, Vibrio, meningococcemia, toxic shock).

14 min readHigh yield

Definitions & Presentation (Sepsis-3)

Sepsis = life-threatening organ dysfunction from a dysregulated host response to infection (Sepsis-3, 2016). Operationally, organ dysfunction means an acute rise in the SOFA score ≥2. Septic shock is a subset: persistent hypotension needing vasopressors to keep MAP ≥65 mmHg and lactate >2 mmol/L despite adequate fluid resuscitation — mortality >40%.

At the bedside, qSOFA (≥2 of: RR ≥22, altered mentation, SBP ≤100) flags high-risk infected patients, though the 2021 Surviving Sepsis Campaign recommends against qSOFA as a single screening tool and favors more sensitive screens (SIRS/NEWS/MEWS). On Step 2 CK, remember that fever + tachycardia alone is not sepsis — you need infection PLUS organ dysfunction: hypotension, ↑lactate, ↑creatinine, ↓urine output, altered mental status, or thrombocytopenia. Gram-positives (S. aureus, Streptococcus, Enterococcus) and gram-negatives (E. coli — the top single gram-negative, often urosepsis) predominate. Early recognition plus the Hour-1 bundle drives survival.

The Hour-1 Sepsis Bundle (first 60 minutes)

Bundle elements are started together within the first hour — only two true ordering rules: cultures before antibiotics, and fluids before pressors.

  • Measure lactate; remeasure in 2–4 h if initially >2 mmol/L (track clearance)
  • Draw 2 sets of blood cultures BEFORE antibiotics — but never delay abx >45 min to get them
  • Broad-spectrum antibiotics within 1 hour of recognition
  • ≥30 mL/kg IV balanced crystalloid (e.g., LR) for hypotension or lactate ≥4
  • Norepinephrine = first-line vasopressor if MAP <65 during/after fluids
  • Lactate ≥4 mmol/L signals tissue hypoperfusion and poor prognosis even if BP looks normal
  • Add vasopressin, then IV hydrocortisone, for shock refractory to escalating norepinephrine
  • Source control (drain the abscess, remove the infected line) is essential — antibiotics alone fail without it

Exposure Clue → Organism → Treatment

Clue / VignetteOrganismTreatment / Key point
Asplenia or sickle cell, fulminantEncapsulated (S. pneumoniae, H. flu, N. meningitidis)Ceftriaxone now; OPSI; vaccinate + prophylaxis
Neutropenic fever (post-chemo)Pseudomonas aeruginosaCefepime or pip-tazo; ecthyma gangrenosum
IV drug use, tricuspid vegetationS. aureusVancomycin; right-sided endocarditis
Central venous catheterCoag-neg staph, S. aureus, CandidaRemove line; vancomycin
Raw oysters/seawater + cirrhosisVibrio vulnificusDoxycycline + ceftriaxone; hemorrhagic bullae
Petechiae/purpura, dorm/militaryN. meningitidisCeftriaxone; Waterhouse-Friderichsen
Urosepsis, elderlyE. coliCeftriaxone; #1 gram-negative
Pregnant/elderly, deli meat/soft cheeseListeriaAdd ampicillin (cephalosporins miss it)
Scanning electron micrograph of clustered rod-shaped Escherichia coli bacteria
E. coli — the most common single gram-negative cause of sepsis, classically from a urinary source. · Wikimedia Commons — NIAID — Public domain, via Wikimedia Commons
Encapsulated Organisms (asplenia risk)

Asplenic and functionally asplenic (sickle cell) patients can't opsonize/clear encapsulated bacteriaoverwhelming post-splenectomy infection (OPSI).

"Please SHiNE my SKiS" — encapsulated organisms:

  • PPseudomonas aeruginosa
  • SStreptococcus pneumoniae (#1 OPSI cause)
  • HHaemophilus influenzae type b
  • NNeisseria meningitidis
  • EEscherichia coli
  • SSalmonella (esp. Typhi)
  • KKlebsiella pneumoniae
  • S — group B Streptococcus (S. agalactiae)

Prevent with vaccination (pneumococcal, Hib, meningococcal) ± penicillin prophylaxis in select patients. Exam trigger: fever in an asplenic patient = emergency → empiric ceftriaxone immediately. (Dog bite in an asplenic patient? Think Capnocytophaga canimorsus.)

Vignette: Neutropenic Fever

A 58-year-old woman 7 days after induction chemotherapy for AML has a single T 38.6°C spike. ANC 300/µL. BP 118/74, HR 96. Exam is unremarkable with no localizing source.

  • Diagnosis: Febrile neutropenia (ANC <500 + single temp ≥38.3°C, or ≥38.0°C sustained 1 h) — a medical emergency.
  • Next best step: Draw blood cultures (peripheral and line) and immediately start empiric antipseudomonal monotherapy — cefepime, pip-tazo, or a carbapenem. Do not wait for a fever source or for culture results.
  • Add vancomycin only for specific triggers: suspected catheter/line infection, skin or soft-tissue infection, hemodynamic instability, pneumonia, or known MRSA colonization. Otherwise, empiric vancomycin is not routine and should be stopped if cultures are negative at 48 h.
Vignette: Septic Shock — Next Step

A 70-year-old man with dysuria is hypotensive (BP 82/50), HR 118, T 39.1°C, and confused. Lactate 5.2 mmol/L. He receives blood cultures, ceftriaxone, and a 30 mL/kg LR bolus. Repeat BP is 84/52.

  • Diagnosis: Septic shock, likely urosepsis (→ E. coli).
  • Next best step: Start norepinephrine targeting MAP ≥65 mmHg — vasopressors are indicated for fluid-refractory hypotension. Do not keep giving open-ended fluid boluses (risks pulmonary edema).
  • If MAP stays low despite escalating norepinephrine, add vasopressin, then IV hydrocortisone for refractory shock. Reassess perfusion by lactate clearance and urine output, and pursue source control (obstructing stone → decompression).
Empiric Antibiotics & Source Thinking
  • Default broad regimen: Vancomycin (MRSA) + an antipseudomonal β-lactam (pip-tazo, cefepime, or meropenem)
  • Blood cultures before antibiotics, but never delay abx to obtain them in septic shock
  • De-escalate/narrow once cultures and sensitivities return
  • Add ampicillin when Listeria is a concern (neonates, pregnant, elderly, immunocompromised, unpasteurized foods)
  • Add clindamycin for toxin suppression in toxic shock / necrotizing fasciitis (Strep/Staph)
  • Echinocandin (e.g., micafungin) if Candida bloodstream infection is suspected (TPN, prolonged central line, broad-spectrum abx)
  • Procalcitonin can support stopping antibiotics but should not delay starting them
Scanning electron micrograph of grape-like clusters of spherical Staphylococcus aureus cocci
Staphylococcus aureus — a leading gram-positive cause of bloodstream infection and right-sided endocarditis in IV drug users. · Wikimedia Commons — Content Providers(s): CDC/ Matthew J. Arduino, DRPH Photo Credit: Janice Haney Carr — Public domain, via Wikimedia Commons

Comparison: Staphylococcal vs Streptococcal TSS

FeatureStaphylococcal TSSStreptococcal TSS
Organism / toxinS. aureus (TSST-1 superantigen)Group A Strep (S. pyogenes); pyrogenic exotoxin (SpeA/SpeC) superantigen
ExposureTampons, nasal packing, surgical woundSkin/soft-tissue, necrotizing fasciitis, varicella
Blood culturesUsually negativeOften positive
SkinDiffuse macular rash → palm/sole desquamationLess rash; severe soft-tissue pain out of proportion
TreatmentRemove source + vancomycin + clindamycinSurgical debridement + penicillin + clindamycin ± IVIG

Practice Infectious Disease now

Board-style questions, spaced-repetition flashcards, and a Socratic AI tutor — free to start.