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Infectious Disease · Infectious Disease

Antimicrobial Prophylaxis & Stewardship

A Step 2 CK–focused tour of antimicrobial prophylaxis across three arenas — surgical, post-exposure, and HIV opportunistic-infection — paired with stewardship decisions, including the high-yield traps of when NOT to give antibiotics (asymptomatic bacteriuria, viral URIs) and how to avoid C. difficile.

13 min readHigh yield

The big picture: prevent, don't just treat

Antimicrobial prophylaxis means giving antibiotics before infection is established, in patients whose risk is predictable. Boards test three arenas: (1) surgical prophylaxis to prevent surgical-site infection (SSI), (2) post-exposure prophylaxis after a defined contact (meningococcus, HIV, rabies, pertussis, tetanus), and (3) opportunistic-infection prophylaxis in the immunocompromised, keyed to CD4 count or transplant status. The paired discipline is antimicrobial stewardship — the narrowest effective drug, correct dose, and shortest duration, with de-escalation once cultures return.

The recurring Step 2 CK decision is whether to give an antibiotic at all, and if so, which one and for how long. Overtreatment is frequently the wrong answer: it breeds resistance and C. difficile colitis. Learn to spot the traps — treating asymptomatic bacteriuria or a viral URI — where the correct next step is often no antibiotic.

Surgical antimicrobial prophylaxis
  • Cefazolin is first-line for most clean/clean-contaminated cases — covers skin flora (S. aureus, streptococci).
  • Timing: infuse within 60 min before incision; vancomycin and fluoroquinolones within 120 min (longer infusion time).
  • Colorectal / appendiceal / GI cases: add anaerobic coverage — cefazolin + metronidazole, or cefoxitin — plus oral antibiotic bowel prep.
  • MRSA colonization or severe β-lactam allergy: use vancomycin (add gram-negative coverage if needed).
  • Redose intraoperatively for long cases (cefazolin ~every 4 h) or blood loss >1.5 L.
  • Weight-based dose: cefazolin 2 g (3 g if ≥120 kg).
  • Duration: a single preoperative dose is usually enough; stop within 24 h. Continuing antibiotics until drains/catheters are removed is a classic wrong answer and does not lower SSI.
Infective endocarditis prophylaxis (2021 AHA)

Give prophylaxis only for a highest-risk cardiac condition undergoing a qualifying procedure.

Highest-risk cardiac conditions:

  • Prosthetic valve or prosthetic valve-repair material (includes TAVR).
  • Prior infective endocarditis.
  • Unrepaired cyanotic CHD; repaired CHD with prosthetic material within 6 months, or with a residual defect adjacent to the patch/device.
  • Cardiac transplant with valvulopathy.

Qualifying procedures:

  • Dental work manipulating gingiva/periapical tissue or perforating oral mucosa.
  • Respiratory-mucosa incision (e.g., tonsillectomy); surgery on infected skin/musculoskeletal tissue.
  • NOT routine GI/GU procedures.

Regimen: Amoxicillin 2 g PO 30–60 min before. Penicillin allergy → cephalexin (only if the reaction was not anaphylaxis/angioedema/urticaria), azithromycin, or doxycycline. Clindamycin is no longer recommended (2021 update) due to C. difficile risk. MVP, bicuspid valve, HCM, rheumatic disease, prior CABGno prophylaxis.

Vignette: dental work with a prosthetic valve

A 58-year-old man with a bioprosthetic aortic valve (placed 3 years ago) is scheduled for a tooth extraction. No drug allergies. Best next step?

Decision: A prosthetic valve is a highest-risk cardiac condition, and extraction manipulates gingival tissue = qualifying dental procedure → prophylaxis is indicated.

Next step: Amoxicillin 2 g PO 30–60 minutes before the procedure (single dose).

Contrasts to lock in:

  • Same patient for a colonoscopyno prophylaxis (GI procedure).
  • Patient with only mitral valve prolapse or a bicuspid aortic valveno prophylaxis, regardless of procedure.
  • Penicillin-allergic → cephalexin (if non-anaphylactic), azithromycin, or doxycycline — not clindamycin.

Post-exposure prophylaxis at a glance

ExposureOrganismFirst-line prophylaxis
Close contact, meningococcal diseaseN. meningitidisCiprofloxacin 500 mg once (or rifampin; ceftriaxone IM in pregnancy)
Household w/ vulnerable child, invasive HibH. influenzae type bRifampin
Close contact, pertussisB. pertussisAzithromycin (macrolide)
Needlestick / high-risk sexual, HIVHIVTenofovir/emtricitabine + dolutegravir ×28 d, start <72 h
Animal bite, previously unvaccinatedRabies virusWound wash + RIG + vaccine series
Tetanus-prone wound, <3 or unknown dosesC. tetaniTdap + TIG
Sexual contact, early syphilisT. pallidumBenzathine penicillin G IM
Newborn of HBsAg+ mother / exposureHBVHBIG + vaccine
Vignette: positive urine culture, no symptoms

A 78-year-old nursing-home woman has a screening urinalysis with pyuria and a culture growing >10⁵ CFU/mL *E. coli*. She is afebrile with no dysuria, frequency, urgency, or suprapubic pain, and is at her baseline mental status. Next best step?

Decision: This is asymptomatic bacteriuria, not a UTI. Do not give antibiotics — treatment doesn't help and drives resistance and C. difficile.

Treat asymptomatic bacteriuria ONLY in:

  1. Pregnancy — screen and treat (prevents pyelonephritis/preterm complications).
  2. Before a urologic procedure with expected mucosal bleeding (e.g., TURP).

Traps that do NOT warrant treatment: elderly, diabetic, or chronically catheterized patients without symptoms; cloudy or malodorous urine alone.

Gram stain of cerebrospinal fluid showing gram-negative diplococci of Neisseria meningitidis among neutrophils
CSF Gram stain: gram-negative diplococci (Neisseria meningitidis). Close contacts require chemoprophylaxis regardless of vaccination status. · Wikimedia Commons — Microman12345 — CC BY-SA 4.0, via Wikimedia Commons
CD4 thresholds & the '4 C's'

HIV opportunistic-infection prophylaxis — "200, 100, 50":

  • CD4 <200PJP prophylaxis: TMP-SMX (also covers Toxoplasma). Alt: dapsone (check G6PD), atovaquone.
  • CD4 <100 + positive Toxoplasma IgGTMP-SMX (one drug covers both).
  • CD4 <50MAC: azithromycin weekly (may be omitted if effective ART is started promptly, per current guidance).

Discontinue each once ART raises CD4 above the threshold for ~3 months.

Antibiotics most likely to cause C. difficile — the classic "4 C's":

  • Clindamycin (classic, highest relative risk)
  • Cephalosporins (esp. 3rd/4th generation)
  • Ciprofloxacin / fluoroquinolones
  • Co-amoxiclav (amoxicillin-clavulanate) / broad-spectrum penicillins
Antimicrobial stewardship principles
  • The "D's": right Drug, Dose, Duration, De-escalation — after establishing the correct Diagnosis.
  • Culture before you treat (blood, urine, wound), then narrow to the organism's susceptibilities.
  • IV → PO switch once the patient is stable and tolerating oral: highly bioavailable agents include fluoroquinolones, metronidazole, linezolid, fluconazole, TMP-SMX, doxycycline, clindamycin.
  • Shortest effective course: CAP ~5 days, uncomplicated cystitis 3–5 days, cellulitis ~5 days, pyelonephritis 5–7 days (fluoroquinolone).
  • No antibiotics for: viral URIs, acute bronchitis, or asymptomatic bacteriuria (except pregnancy / urologic procedures).
  • Procalcitonin can support stopping antibiotics in respiratory infection/sepsis.
  • Penicillin-allergy delabeling restores narrow options and avoids broad-spectrum alternatives.
Silver-stained microscopy showing cup-shaped cysts of Pneumocystis in lung specimen
Pneumocystis cysts (methenamine silver stain). A CD4 count <200 warrants TMP-SMX prophylaxis against PJP. · Wikimedia Commons — Wikimedia Commons — Public domain, via Wikimedia Commons

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